Index

A

AbstractDataLoaderBuilder (class in gdeep.data.datasets) AbstractPreprocessing (class in gdeep.data) accuracy() (in module gdeep.trainer) ActivationFunction (class in gdeep.utility)

add_hparams() (gdeep.search.GiottoSummaryWriter method) all_close() (gdeep.data.persistence_diagrams.OneHotEncodedPersistenceDiagram method) AttentionType (class in gdeep.utility) AttributionFactory (class in gdeep.analysis.interpretability) autoreload_if_notebook() (in module gdeep.utility)

B

Benchmark (class in gdeep.search) build() (gdeep.analysis.interpretability.AttributionFactory method) (gdeep.data.DatasetFactory method) (gdeep.data.datasets.DataLoaderBuilder method) (gdeep.data.datasets.DatasetBuilder method) (gdeep.data.datasets.DlBuilderFromDataCloud method)

build_model() (gdeep.topology_layers.Persformer method)

C

clean_up_files() (in module gdeep.search) collate_fn_persistence_diagrams() (in module gdeep.data.persistence_diagrams) Compactification (class in gdeep.visualization)

copy_dataloader_params() (gdeep.trainer.Trainer static method) create_final_distance_matrix() (gdeep.visualization.Compactification method) create_pd_orbits() (in module gdeep.data.datasets)

D

DataLoaderBuilder (class in gdeep.data.datasets) DataLoaderKwargs (class in gdeep.data.datasets) DatasetBuilder (class in gdeep.data.datasets) DatasetCloud (class in gdeep.data.datasets)

DatasetFactory (class in gdeep.data) DecisionBoundaryCalculator (class in gdeep.analysis.decision_boundary) DlBuilderFromDataCloud (class in gdeep.data.datasets) download() (gdeep.data.datasets.DatasetCloud method)

E

ensemble_wrapper() (in module gdeep.utility)

evaluate_classification() (gdeep.trainer.Trainer method)

F

feature_importance() (gdeep.analysis.interpretability.Interpreter method) FFNet (class in gdeep.models) filter_by_lifetime() (gdeep.data.persistence_diagrams.OneHotEncodedPersistenceDiagram method) FilterPersistenceDiagramByHomologyDimension (class in gdeep.data.preprocessors) FilterPersistenceDiagramByLifetime (class in gdeep.data.preprocessors) fit_to_dataset() (gdeep.data.preprocessors.FilterPersistenceDiagramByHomologyDimension method) (gdeep.data.preprocessors.FilterPersistenceDiagramByLifetime method) (gdeep.data.preprocessors.TokenizerQA method) (gdeep.data.preprocessors.TokenizerTextClassification method)

forward() (gdeep.models.FFNet method) (gdeep.models.PeriodicNeuralNetwork method) (gdeep.topology_layers.Persformer method) (gdeep.topology_layers.PersformerWrapper method) from_numpy() (gdeep.data.persistence_diagrams.OneHotEncodedPersistenceDiagram static method) FromArray (class in gdeep.data.datasets)

G

gdeep.analysis.decision_boundary module gdeep.analysis.interpretability module gdeep.data module gdeep.data.datasets module gdeep.data.persistence_diagrams module gdeep.data.preprocessors module gdeep.models module gdeep.search module gdeep.topology_layers module gdeep.trainer module gdeep.utility module gdeep.utility.extended_persistence module gdeep.utility.optimization module gdeep.visualization module generate_orbit_parallel() (in module gdeep.data.datasets) get_activations() (gdeep.models.ModelExtractor method)

get_all_points_in_homology_dimension() (gdeep.data.persistence_diagrams.OneHotEncodedPersistenceDiagram method) get_attr() (in module gdeep.analysis.interpretability) get_dataloader_combined() (gdeep.data.datasets.OrbitsGenerator method) get_dataloader_orbits() (gdeep.data.datasets.OrbitsGenerator method) get_dataloader_persistence_diagrams() (gdeep.data.datasets.OrbitsGenerator method) get_dataset() (in module gdeep.data.datasets) get_decision_boundary() (gdeep.analysis.decision_boundary.DecisionBoundaryCalculator method) (gdeep.analysis.decision_boundary.GradientFlowDecisionBoundaryCalculator method) (gdeep.analysis.decision_boundary.QuasihyperbolicDecisionBoundaryCalculator method) (gdeep.models.ModelExtractor method) get_dim() (gdeep.analysis.decision_boundary.UniformlySampledPoint method) get_existing_datasets() (gdeep.data.datasets.DatasetCloud method) get_gradients() (gdeep.models.ModelExtractor method) get_layers_grads() (gdeep.models.ModelExtractor method) get_layers_param() (gdeep.models.ModelExtractor method) get_lifetimes() (gdeep.data.persistence_diagrams.OneHotEncodedPersistenceDiagram method) get_metadata() (gdeep.data.datasets.DlBuilderFromDataCloud method) get_num_homology_dimensions() (gdeep.data.persistence_diagrams.OneHotEncodedPersistenceDiagram method) get_num_points() (gdeep.data.persistence_diagrams.OneHotEncodedPersistenceDiagram method) get_one_hot_encoded_persistence_diagram_from_gtda() (in module gdeep.data.persistence_diagrams) get_one_hot_encoded_persistence_diagram_from_gudhi_extended() (in module gdeep.data.persistence_diagrams) get_orbits() (gdeep.data.datasets.OrbitsGenerator method) get_parameter_types() (in module gdeep.utility) get_persistence_diagrams() (gdeep.data.datasets.OrbitsGenerator method) get_points_in_homology_dimension() (gdeep.data.persistence_diagrams.OneHotEncodedPersistenceDiagram method) get_raw_data() (gdeep.data.persistence_diagrams.OneHotEncodedPersistenceDiagram method) get_return_type() (in module gdeep.utility) GiottoSummaryWriter (class in gdeep.search) GradientFlowDecisionBoundaryCalculator (class in gdeep.analysis.decision_boundary) graph_extended_persistence_hks() (in module gdeep.utility.extended_persistence)

H

HPOConfig (class in gdeep.search)

HyperParameterOptimization (class in gdeep.search)

I

ImageClassificationFromFiles (class in gdeep.data.datasets) interpret() (gdeep.analysis.interpretability.Interpreter method)

interpret_text() (gdeep.analysis.interpretability.Interpreter method) Interpreter (class in gdeep.analysis.interpretability) is_notebook() (in module gdeep.utility)

K

KnownWarningSilencer (class in gdeep.utility)

L

LayerNormStyle (class in gdeep.utility)

load() (gdeep.data.persistence_diagrams.OneHotEncodedPersistenceDiagram static method)

M

MinMaxScalarPersistenceDiagram (class in gdeep.data.preprocessors) MissingClosureError MissingVocabularyError ModelExtractor (class in gdeep.models) module gdeep.analysis.decision_boundary gdeep.analysis.interpretability gdeep.data gdeep.data.datasets gdeep.data.persistence_diagrams gdeep.data.preprocessors gdeep.models gdeep.search gdeep.topology_layers gdeep.trainer gdeep.utility gdeep.utility.extended_persistence gdeep.utility.optimization gdeep.visualization

N

Normalization (class in gdeep.data.preprocessors)

NormalizationPersistenceDiagram (class in gdeep.data.preprocessors)

O

OneHotEncodedPersistenceDiagram (class in gdeep.data.persistence_diagrams)

OrbitsGenerator (class in gdeep.data.datasets)

P

parallel_tpu_training_loops() (gdeep.trainer.Trainer method) PeriodicNeuralNetwork (class in gdeep.models) Persformer (class in gdeep.topology_layers) PersformerConfig (class in gdeep.topology_layers) PersformerWrapper (class in gdeep.topology_layers) persistence_diagrams_of_activations() (in module gdeep.visualization) persistence_function() (gdeep.utility.optimization.PersistenceGradient method) PersistenceDiagramFromFiles (class in gdeep.data.datasets) PersistenceGradient (class in gdeep.utility.optimization) phi() (gdeep.utility.optimization.PersistenceGradient method) plot() (gdeep.data.persistence_diagrams.OneHotEncodedPersistenceDiagram method) plot_3d_dataset() (gdeep.visualization.Visualiser method) plot_activations() (gdeep.visualization.Visualiser method) plot_attribution() (gdeep.visualization.Visualiser method) plot_attributions_persistence_diagrams() (gdeep.visualization.Visualiser method)

plot_betti_curves_layers() (gdeep.visualization.Visualiser method) plot_betti_numbers_layers() (gdeep.visualization.Visualiser method) plot_betti_surface_layers() (gdeep.visualization.Visualiser method) plot_chart() (gdeep.visualization.Compactification method) plot_decision_boundary() (gdeep.visualization.Visualiser method) plot_feature_importance() (gdeep.visualization.Visualiser method) plot_interactive_model() (gdeep.visualization.Visualiser method) plot_interpreter_image() (gdeep.visualization.Visualiser method) plot_interpreter_text() (gdeep.visualization.Visualiser method) plot_persistence_diagrams() (gdeep.visualization.Visualiser method) plot_self_attention() (gdeep.visualization.Visualiser method) plotly2tensor() (in module gdeep.visualization) PoolerType (class in gdeep.utility) powerset() (gdeep.utility.optimization.PersistenceGradient static method) PreprocessingPipeline (class in gdeep.data)

Q

QuasihyperbolicDecisionBoundaryCalculator (class in gdeep.analysis.decision_boundary)

R

register_builder() (gdeep.analysis.interpretability.AttributionFactory method) (gdeep.data.DatasetFactory method) register_pipe_hook() (gdeep.trainer.Trainer method)

regularization_penalty() (gdeep.trainer.TihonovRegularizer method) (gdeep.trainer.TopologicalRegularizer method) Regularizer (class in gdeep.trainer) Rotation (class in gdeep.data.datasets)

S

SAM (class in gdeep.utility.optimization) SAMOptimizer (class in gdeep.utility.optimization) save() (gdeep.data.persistence_diagrams.OneHotEncodedPersistenceDiagram method) save_model_and_optimizer() (in module gdeep.utility) SaveLayerOutput (class in gdeep.models) SaveNodeOutput (class in gdeep.models) SaveOutput (class in gdeep.models)

set_homology_dimension_names() (gdeep.data.persistence_diagrams.OneHotEncodedPersistenceDiagram method) sgd() (gdeep.utility.optimization.PersistenceGradient method) start() (gdeep.search.Benchmark method) (gdeep.search.HyperParameterOptimization method) step() (gdeep.analysis.decision_boundary.DecisionBoundaryCalculator method) (gdeep.analysis.decision_boundary.GradientFlowDecisionBoundaryCalculator method) (gdeep.analysis.decision_boundary.QuasihyperbolicDecisionBoundaryCalculator method) (gdeep.utility.optimization.SAM method)

T

TihonovRegularizer (class in gdeep.trainer) to_dict() (gdeep.search.HPOConfig method) (gdeep.search.TrainerConfig method) (gdeep.trainer.TrainerConfig method) TokenizerQA (class in gdeep.data.preprocessors) TokenizerTextClassification (class in gdeep.data.preprocessors) TokenizerTranslation (class in gdeep.data.preprocessors) TopologicalRegularizer (class in gdeep.trainer)

TopologicalRegularizerData (class in gdeep.trainer) torch_transform() (in module gdeep.utility) ToriDataset (class in gdeep.data.datasets) ToTensorImage (class in gdeep.data.preprocessors) train() (gdeep.trainer.Trainer method) Trainer (class in gdeep.trainer) TrainerConfig (class in gdeep.search) (class in gdeep.trainer) TransformingDataset (class in gdeep.data)

U

UniformlySampledPoint (class in gdeep.analysis.decision_boundary)

V

Visualiser (class in gdeep.visualization)